STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col1a2Collagen alpha-2(I) chain. (1363 aa)    
Predicted Functional Partners:
Col1a1
Collagen alpha-1(I) chain.
  
0.999
Col3a1
Collagen alpha-1(III) chain.
  
0.998
Lum
Lumican.
   
 
 0.964
COL5A2
Collagen alpha-2(V) chain preproprotein.
  
0.961
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
   
 0.959
Itga2
Integrin alpha-2; Belongs to the integrin alpha chain family.
   
 0.940
Itgav
Integrin alpha-V; Belongs to the integrin alpha chain family.
   
 0.934
Sparc
SPARC.
   
 
 0.906
Sdc1
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.902
Dcn
Decorin; May affect the rate of fibrils formation.
   
 
 0.901
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.