Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CTNS | GW7_08142 | G5B936 | G5BX17 | Cystinosin isoform 2. | Interleukin-13 receptor alpha-1. | 0.678 |
CTNS | Ybx2 | G5B936 | G5B5B0 | Cystinosin isoform 2. | Y-box-binding protein 2. | 0.544 |
DNAJA2 | Ybx2 | G5BAE6 | G5B5B0 | DnaJ-like protein subfamily A member 2. | Y-box-binding protein 2. | 0.519 |
Ddx6 | SNRPD3 | G5BHM5 | G5B630 | Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | 0.453 |
Ddx6 | Ybx2 | G5BHM5 | G5B5B0 | Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. | Y-box-binding protein 2. | 0.646 |
Figla | GW7_00379 | G5B4Y7 | G5BQR5 | Factor in the germline alpha. | Spermatogenesis-and oogenesis-specific basic helix-loop-helix-containing protein 1. | 0.616 |
Figla | Nobox | G5B4Y7 | G5C2P0 | Factor in the germline alpha. | Homeobox protein NOBOX. | 0.784 |
Figla | Ybx2 | G5B4Y7 | G5B5B0 | Factor in the germline alpha. | Y-box-binding protein 2. | 0.535 |
GW7_00379 | Figla | G5BQR5 | G5B4Y7 | Spermatogenesis-and oogenesis-specific basic helix-loop-helix-containing protein 1. | Factor in the germline alpha. | 0.616 |
GW7_00379 | Nobox | G5BQR5 | G5C2P0 | Spermatogenesis-and oogenesis-specific basic helix-loop-helix-containing protein 1. | Homeobox protein NOBOX. | 0.583 |
GW7_00379 | Ybx2 | G5BQR5 | G5B5B0 | Spermatogenesis-and oogenesis-specific basic helix-loop-helix-containing protein 1. | Y-box-binding protein 2. | 0.541 |
GW7_08142 | CTNS | G5BX17 | G5B936 | Interleukin-13 receptor alpha-1. | Cystinosin isoform 2. | 0.678 |
GW7_08142 | Ybx2 | G5BX17 | G5B5B0 | Interleukin-13 receptor alpha-1. | Y-box-binding protein 2. | 0.538 |
Hsf5 | Ybx2 | G5BJU0 | G5B5B0 | Heat shock factor protein 5. | Y-box-binding protein 2. | 0.589 |
Neurl4 | Ybx2 | G5B5B3 | G5B5B0 | Neuralized-like protein 4. | Y-box-binding protein 2. | 0.553 |
Nobox | Figla | G5C2P0 | G5B4Y7 | Homeobox protein NOBOX. | Factor in the germline alpha. | 0.784 |
Nobox | GW7_00379 | G5C2P0 | G5BQR5 | Homeobox protein NOBOX. | Spermatogenesis-and oogenesis-specific basic helix-loop-helix-containing protein 1. | 0.583 |
Nobox | Ybx2 | G5C2P0 | G5B5B0 | Homeobox protein NOBOX. | Y-box-binding protein 2. | 0.538 |
SNRPD3 | Ddx6 | G5B630 | G5BHM5 | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family. | 0.453 |
SNRPD3 | Ybx2 | G5B630 | G5B5B0 | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | Y-box-binding protein 2. | 0.544 |
page 1 of 2