STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ybx2Y-box-binding protein 2. (266 aa)    
Predicted Functional Partners:
Ddx6
Putative ATP-dependent RNA helicase DDX6; Belongs to the DEAD box helicase family.
   
 0.646
Hsf5
Heat shock factor protein 5.
      
 0.589
Neurl4
Neuralized-like protein 4.
      
 0.553
SNRPD3
Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing.
   
 0.544
CTNS
Cystinosin isoform 2.
      
 0.544
GW7_00379
Spermatogenesis-and oogenesis-specific basic helix-loop-helix-containing protein 1.
      
 0.541
GW7_08142
Interleukin-13 receptor alpha-1.
      
 0.538
Nobox
Homeobox protein NOBOX.
      
 0.538
Figla
Factor in the germline alpha.
      
 0.535
DNAJA2
DnaJ-like protein subfamily A member 2.
   
 
 0.519
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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