STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GW7_04057Nuclear pore complex protein Nup88. (596 aa)    
Predicted Functional Partners:
GW7_05154
E3 SUMO-protein ligase RanBP2.
    
 0.992
GW7_03395
Nuclear pore complex protein Nup214.
    
 0.965
NUP98
Nuclear pore complex protein Nup98-Nup96 isoform 4.
    
 0.930
GW7_05468
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.896
GW7_04475
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.896
SEH1L
Nucleoporin SEH1 isoform 2; Belongs to the WD repeat SEC13 family.
   
 0.887
NUP43
Nucleoporin Nup43.
   
 0.885
NUP155
Nuclear pore complex protein Nup155 isoform 1.
    
 0.882
GW7_03803
Nuclear pore complex protein Nup205.
    
 0.878
NUP93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
    
 0.875
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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