STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF13E3 ubiquitin-protein ligase RNF13. (381 aa)    
Predicted Functional Partners:
RPS27A
Ubiquitin-40S ribosomal protein S27a.
    
  0.656
GW7_08766
Nogo-B receptor.
    
 
 0.549
GW7_11830
Tetratricopeptide repeat protein 26.
      
 0.544
Rnf128
E3 ubiquitin-protein ligase RNF128.
      
0.541
GW7_09576
Uncharacterized protein.
      
 0.538
Ttc7b
Tetratricopeptide repeat protein 7B.
      
 0.499
GW7_07219
Frizzled-6; Belongs to the G-protein coupled receptor Fz/Smo family.
    
 
 0.491
GW7_04847
Protein-L-isoaspartate(D-aspartate) O-methyltransferase.
      
 0.479
GW7_17630
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 
 0.455
GW7_14533
AP-3 complex subunit sigma-1.
    
 
 0.455
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.