STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GW7_17557Histone deacetylase 2. (133 aa)    
Predicted Functional Partners:
Arid4b
AT-rich interactive domain-containing protein 4B.
   
 0.844
Sin3b
Paired amphipathic helix protein Sin3b.
   
 0.827
Arid4a
AT-rich interactive domain-containing protein 4A.
   
 0.818
GW7_07504
Lysine-specific histone demethylase 1.
   
 0.812
Rb1
Retinoblastoma-associated protein.
   
 0.810
Mta1
Metastasis-associated protein MTA1.
   
 0.809
Mta2
Metastasis-associated protein MTA2.
   
 0.803
Sap30
Histone deacetylase complex subunit SAP30.
    
 0.796
Chd4
Chromodomain-helicase-DNA-binding protein 4.
   
 0.796
GW7_12761
Histone deacetylase 2.
 
  
0.781
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.