GW7_09596 protein (Heterocephalus glaber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GW7_09596

StAR-related lipid transfer protein 3. (612 aa)

Predicted Functional Partners:

Vapa

0.914

Stard3nl

0.891

Mospd2

0.882

Star

0.815

VAPB

0.716

GW7_18536

0.716

Stard7

0.677

STARD10

0.677

Col4a3bp

0.658

Zfyve27

0.610

Your Current Organism:

Heterocephalus glaber

NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Col4a3bp	GW7_09596	G5AVZ8	G5BRX0	Collagen type IV alpha-3-binding protein.	StAR-related lipid transfer protein 3.	0.658
Col4a3bp	GW7_18536	G5AVZ8	G5B3K5	Collagen type IV alpha-3-binding protein.	Vesicle-associated membrane protein-associated protein B.	0.533
Col4a3bp	STARD10	G5AVZ8	G5AS66	Collagen type IV alpha-3-binding protein.	PCTP-like protein.	0.617
Col4a3bp	Star	G5AVZ8	G5B0A4	Collagen type IV alpha-3-binding protein.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.641
Col4a3bp	Stard7	G5AVZ8	G5APU2	Collagen type IV alpha-3-binding protein.	StAR-related lipid transfer protein 7, mitochondrial.	0.625
Col4a3bp	VAPB	G5AVZ8	G5AUM1	Collagen type IV alpha-3-binding protein.	Vesicle-associated membrane protein-associated protein B/C isoform 1.	0.533
Col4a3bp	Vapa	G5AVZ8	G5C065	Collagen type IV alpha-3-binding protein.	Vesicle-associated membrane protein-associated protein A.	0.761
GW7_09596	Col4a3bp	G5BRX0	G5AVZ8	StAR-related lipid transfer protein 3.	Collagen type IV alpha-3-binding protein.	0.658
GW7_09596	GW7_18536	G5BRX0	G5B3K5	StAR-related lipid transfer protein 3.	Vesicle-associated membrane protein-associated protein B.	0.716
GW7_09596	Mospd2	G5BRX0	G5BK94	StAR-related lipid transfer protein 3.	Motile sperm domain-containing protein 2.	0.882
GW7_09596	STARD10	G5BRX0	G5AS66	StAR-related lipid transfer protein 3.	PCTP-like protein.	0.677
GW7_09596	Star	G5BRX0	G5B0A4	StAR-related lipid transfer protein 3.	Steroidogenic acute regulatory protein, mitochondrial; Plays a key role in steroid hormone synthesis by enhancing the metabolism of cholesterol into pregnenolone. Mediates the transfer of cholesterol from the outer mitochondrial membrane to the inner mitochondrial membrane where it is cleaved to pregnenolone.	0.815
GW7_09596	Stard3nl	G5BRX0	G5B3V3	StAR-related lipid transfer protein 3.	MLN64-like protein.	0.891
GW7_09596	Stard7	G5BRX0	G5APU2	StAR-related lipid transfer protein 3.	StAR-related lipid transfer protein 7, mitochondrial.	0.677
GW7_09596	VAPB	G5BRX0	G5AUM1	StAR-related lipid transfer protein 3.	Vesicle-associated membrane protein-associated protein B/C isoform 1.	0.716
GW7_09596	Vapa	G5BRX0	G5C065	StAR-related lipid transfer protein 3.	Vesicle-associated membrane protein-associated protein A.	0.914
GW7_09596	Zfyve27	G5BRX0	G5C0B5	StAR-related lipid transfer protein 3.	Zinc finger FYVE domain-containing protein 27.	0.610
GW7_18536	Col4a3bp	G5B3K5	G5AVZ8	Vesicle-associated membrane protein-associated protein B.	Collagen type IV alpha-3-binding protein.	0.533
GW7_18536	GW7_09596	G5B3K5	G5BRX0	Vesicle-associated membrane protein-associated protein B.	StAR-related lipid transfer protein 3.	0.716
GW7_18536	Stard3nl	G5B3K5	G5B3V3	Vesicle-associated membrane protein-associated protein B.	MLN64-like protein.	0.512