GW7_00300 protein (Heterocephalus glaber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GW7_00300

Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family. (361 aa)

Predicted Functional Partners:

Cnn1

0.668

Efemp2

0.612

GW7_06871

0.582

Vgll3

0.580

GW7_01890

0.575

GW7_11294

0.571

Copz2

0.553

Ltbp2

0.547

Zdhhc13

0.543

GW7_11001

0.542

Your Current Organism:

Heterocephalus glaber

NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cnn1	GW7_00300	G5AJT7	G5BSR7	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	0.668
Copz2	Efemp2	G5BY18	G5B6I8	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	EGF-containing fibulin-like extracellular matrix protein 2.	0.604
Copz2	GW7_00300	G5BY18	G5BSR7	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	0.553
Copz2	GW7_01890	G5BY18	G5ASC0	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Paired mesoderm homeobox protein 2.	0.539
Copz2	GW7_06871	G5BY18	G5B0L8	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Peptidylprolyl isomerase.	0.601
Copz2	GW7_11294	G5BY18	G5BU88	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Atonal-like protein 8.	0.544
Copz2	Ltbp2	G5BY18	G5C1M3	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Latent-transforming growth factor beta-binding protein 2.	0.551
Copz2	Vgll3	G5BY18	G5BGL9	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	Transcription cofactor vestigial-like protein 3.	0.624
Efemp2	Copz2	G5B6I8	G5BY18	EGF-containing fibulin-like extracellular matrix protein 2.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.604
Efemp2	GW7_00300	G5B6I8	G5BSR7	EGF-containing fibulin-like extracellular matrix protein 2.	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	0.612
Efemp2	GW7_01890	G5B6I8	G5ASC0	EGF-containing fibulin-like extracellular matrix protein 2.	Paired mesoderm homeobox protein 2.	0.599
Efemp2	GW7_06871	G5B6I8	G5B0L8	EGF-containing fibulin-like extracellular matrix protein 2.	Peptidylprolyl isomerase.	0.764
Efemp2	GW7_11294	G5B6I8	G5BU88	EGF-containing fibulin-like extracellular matrix protein 2.	Atonal-like protein 8.	0.565
Efemp2	Vgll3	G5B6I8	G5BGL9	EGF-containing fibulin-like extracellular matrix protein 2.	Transcription cofactor vestigial-like protein 3.	0.583
GW7_00300	Cnn1	G5BSR7	G5AJT7	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	Calponin; Thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C and tropomyosin. The interaction of calponin with actin inhibits the actomyosin Mg-ATPase activity.	0.668
GW7_00300	Copz2	G5BSR7	G5BY18	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.553
GW7_00300	Efemp2	G5BSR7	G5B6I8	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	EGF-containing fibulin-like extracellular matrix protein 2.	0.612
GW7_00300	GW7_01890	G5BSR7	G5ASC0	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	Paired mesoderm homeobox protein 2.	0.575
GW7_00300	GW7_06871	G5BSR7	G5B0L8	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	Peptidylprolyl isomerase.	0.582
GW7_00300	GW7_11001	G5BSR7	G5B7X1	Mas-related G-protein coupled receptor member F; Belongs to the G-protein coupled receptor 1 family.	Calponin-3.	0.542