STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GW7_21410Ras-related protein Rab-5B. (178 aa)    
Predicted Functional Partners:
GW7_01245
Rab5 GDP/GTP exchange factor.
   
 0.956
GW7_19199
DCC-interacting protein 13-beta.
   
 
 0.854
Appl1
DCC-interacting protein 13-alpha.
    
 
 0.846
GW7_05995
Rabenosyn-5.
   
 0.789
Gak
Cyclin G-associated kinase.
   
 0.762
GW7_01135
GTPase-activating protein and VPS9 domain-containing protein 1.
    
 0.673
VPS45
Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.644
GW7_14597
Ankyrin repeat and FYVE domain-containing protein 1.
   
 0.643
GW7_10383
Rab GTPase-binding effector protein 1.
    
 0.637
Rabep1
Rab GTPase-binding effector protein 1.
    
 0.637
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.