STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmp13Collagenase 3. (471 aa)    
Predicted Functional Partners:
Timp2
Metalloproteinase inhibitor 2.
   
 0.925
GW7_11548
Plasminogen; Belongs to the peptidase S1 family.
   
 0.756
Mmp14
Matrix metalloproteinase-14.
  
0.722
GW7_17474
Matrix metalloproteinase-16.
  
0.707
Acan
Aggrecan core protein.
    
 0.704
Adamts5
A disintegrin and metalloproteinase with thrombospondin motifs 5.
   
 
 0.693
Adamts4
A disintegrin and metalloproteinase with thrombospondin motifs 4.
   
 
 0.683
Ctsk
Cathepsin K; Belongs to the peptidase C1 family.
   
 
 0.679
Optc
Opticin.
    
  0.675
Dcn
Decorin; May affect the rate of fibrils formation.
   
 0.666
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.