Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Alyref | GW7_01472 | G5BJ79 | G5C1P0 | THO complex subunit 4. | Putative RNA-binding protein 3. | 0.575 |
Alyref | GW7_02171 | G5BJ79 | G5C373 | THO complex subunit 4. | Putative RNA-binding protein 3. | 0.586 |
Alyref | GW7_02327 | G5BJ79 | G5BDU3 | THO complex subunit 4. | Polyadenylate-binding protein 1. | 0.528 |
Alyref | GW7_04641 | G5BJ79 | G5BGP7 | THO complex subunit 4. | Heterogeneous nuclear ribonucleoprotein G. | 0.482 |
Alyref | GW7_06620 | G5BJ79 | G5AX81 | THO complex subunit 4. | Putative RNA-binding protein 3. | 0.574 |
Alyref | GW7_14818 | G5BJ79 | G5ASS7 | THO complex subunit 4. | Cleavage stimulation factor 64 kDa subunit. | 0.772 |
Alyref | GW7_17391 | G5BJ79 | G5BXD6 | THO complex subunit 4. | Heterogeneous nuclear ribonucleoprotein A3-like protein 1. | 0.616 |
Alyref | NCBP2 | G5BJ79 | G5ALD0 | THO complex subunit 4. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.974 |
Alyref | Srsf1 | G5BJ79 | G5C421 | THO complex subunit 4. | Splicing factor, arginine/serine-rich 1. | 0.910 |
FAU | GW7_01472 | G5B6L6 | G5C1P0 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Putative RNA-binding protein 3. | 0.591 |
FAU | GW7_02171 | G5B6L6 | G5C373 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Putative RNA-binding protein 3. | 0.591 |
FAU | GW7_04641 | G5B6L6 | G5BGP7 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Heterogeneous nuclear ribonucleoprotein G. | 0.591 |
FAU | GW7_06620 | G5B6L6 | G5AX81 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Putative RNA-binding protein 3. | 0.591 |
FAU | GW7_17391 | G5B6L6 | G5BXD6 | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | Heterogeneous nuclear ribonucleoprotein A3-like protein 1. | 0.591 |
GW7_01472 | Alyref | G5C1P0 | G5BJ79 | Putative RNA-binding protein 3. | THO complex subunit 4. | 0.575 |
GW7_01472 | FAU | G5C1P0 | G5B6L6 | Putative RNA-binding protein 3. | 40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. | 0.591 |
GW7_01472 | GW7_02327 | G5C1P0 | G5BDU3 | Putative RNA-binding protein 3. | Polyadenylate-binding protein 1. | 0.594 |
GW7_01472 | GW7_14818 | G5C1P0 | G5ASS7 | Putative RNA-binding protein 3. | Cleavage stimulation factor 64 kDa subunit. | 0.636 |
GW7_01472 | GW7_17391 | G5C1P0 | G5BXD6 | Putative RNA-binding protein 3. | Heterogeneous nuclear ribonucleoprotein A3-like protein 1. | 0.527 |
GW7_01472 | NCBP2 | G5C1P0 | G5ALD0 | Putative RNA-binding protein 3. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.492 |
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