STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMARCAD1annotation not available (1029 aa)    
Predicted Functional Partners:
Trim28
Transcription intermediary factor 1-beta.
   
 
 0.887
GW7_09099
Transcription intermediary factor 1-beta.
   
 
 0.887
Exo1
Exonuclease 1.
    
 
 0.798
MSH2
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
   
 
 0.797
GW7_01200
E3 ubiquitin-protein ligase TRIM33.
   
 
 0.713
GW7_18629
DNA2-like helicase.
    
 
 0.696
GW7_14749
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
 
 
 
 0.690
Wrn
Werner syndrome ATP-dependent helicase.
   
 
 0.603
GW7_02408
Transcription intermediary factor 1-alpha.
   
 
 0.602
GW7_11823
Transcription intermediary factor 1-alpha.
   
 
 0.602
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.