STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Col21a1Collagen alpha-1(XXI) chain. (550 aa)    
Predicted Functional Partners:
Col22a1
Collagen alpha-1(XXII) chain.
    
0.648
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 isoform 2.
   
 0.577
Msra
Peptide methionine sulfoxide reductase.
      
 0.534
SERPINH1
Serpin H1; Belongs to the serpin family.
   
 0.504
Plod1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.502
GW7_12456
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
 0.474
GW7_01021
Collagen alpha-1(XXVII) chain.
     
0.462
Col24a1
Collagen alpha-1(XXIV) chain.
 
   
0.462
GW7_21201
Collagen alpha-1(VIII) chain.
 
 
0.444
Col17a1
Collagen alpha-1(XVII) chain.
     
0.439
Your Current Organism:
Heterocephalus glaber
NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.