GW7_01847 protein (Heterocephalus glaber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GW7_01847

SH2 domain-containing protein 5. (651 aa)

Predicted Functional Partners:

Bcr

0.548

GW7_02479

0.481

GW7_20445

0.481

Spocd1

0.467

GW7_11355

0.451

Rnf144b

0.420

Your Current Organism:

Heterocephalus glaber

NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bcr	GW7_01847	G5B625	G5C4X0	Breakpoint cluster region protein.	SH2 domain-containing protein 5.	0.548
GW7_01847	Bcr	G5C4X0	G5B625	SH2 domain-containing protein 5.	Breakpoint cluster region protein.	0.548
GW7_01847	GW7_02479	G5C4X0	G5B4N0	SH2 domain-containing protein 5.	Cortexin-1.	0.481
GW7_01847	GW7_11355	G5C4X0	G5B0W3	SH2 domain-containing protein 5.	Rho GTPase-activating protein 22.	0.451
GW7_01847	GW7_20445	G5C4X0	G5BAC9	SH2 domain-containing protein 5.	DOMON domain-containing protein.	0.481
GW7_01847	Rnf144b	G5C4X0	G5B713	SH2 domain-containing protein 5.	RBR-type E3 ubiquitin transferase.	0.420
GW7_01847	Spocd1	G5C4X0	G5BUA0	SH2 domain-containing protein 5.	SPOC domain-containing protein 1.	0.467
GW7_02479	GW7_01847	G5B4N0	G5C4X0	Cortexin-1.	SH2 domain-containing protein 5.	0.481
GW7_02479	GW7_20445	G5B4N0	G5BAC9	Cortexin-1.	DOMON domain-containing protein.	0.502
GW7_11355	GW7_01847	G5B0W3	G5C4X0	Rho GTPase-activating protein 22.	SH2 domain-containing protein 5.	0.451
GW7_20445	GW7_01847	G5BAC9	G5C4X0	DOMON domain-containing protein.	SH2 domain-containing protein 5.	0.481
GW7_20445	GW7_02479	G5BAC9	G5B4N0	DOMON domain-containing protein.	Cortexin-1.	0.502
Rnf144b	GW7_01847	G5B713	G5C4X0	RBR-type E3 ubiquitin transferase.	SH2 domain-containing protein 5.	0.420
Spocd1	GW7_01847	G5BUA0	G5C4X0	SPOC domain-containing protein 1.	SH2 domain-containing protein 5.	0.467