GW7_10623 protein (Heterocephalus glaber) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GW7_10623

Nucleolar MIF4G domain-containing protein 1. (1241 aa)

Predicted Functional Partners:

EIF4A3

0.983

Ngdn

0.982

Wdr3

0.982

Utp3

0.977

Rrp36

0.973

Esf1

0.972

GW7_03178

0.971

Rrp9

0.966

MPHOSPH10

0.961

Abt1

0.956

Your Current Organism:

Heterocephalus glaber

NCBI taxonomy Id: 10181
Other names: H. glaber, naked mole rat, naked mole-rat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Abt1	Esf1	G5ARP5	G5ALV3	Activator of basal transcription 1.	ESF1-like protein.	0.984
Abt1	GW7_10623	G5ARP5	G5C8R8	Activator of basal transcription 1.	Nucleolar MIF4G domain-containing protein 1.	0.956
Abt1	MPHOSPH10	G5ARP5	G5B6I1	Activator of basal transcription 1.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.654
Abt1	Ngdn	G5ARP5	G5ASM0	Activator of basal transcription 1.	Neuroguidin.	0.941
Abt1	Rrp36	G5ARP5	G5BNL2	Activator of basal transcription 1.	Uncharacterized protein.	0.993
Abt1	Rrp9	G5ARP5	G5AXN8	Activator of basal transcription 1.	U3 small nucleolar RNA-interacting protein 2.	0.663
Abt1	Utp3	G5ARP5	G5BN00	Activator of basal transcription 1.	Something about silencing protein 10.	0.421
Abt1	Wdr3	G5ARP5	G5B2R7	Activator of basal transcription 1.	WD repeat-containing protein 3.	0.960
EIF4A3	Esf1	G5AKN8	G5ALV3	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	ESF1-like protein.	0.554
EIF4A3	GW7_03178	G5AKN8	G5AWT3	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Nucleolar complex protein 4-like protein.	0.516
EIF4A3	GW7_10623	G5AKN8	G5C8R8	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Nucleolar MIF4G domain-containing protein 1.	0.983
EIF4A3	Ngdn	G5AKN8	G5ASM0	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Neuroguidin.	0.981
EIF4A3	Rrp36	G5AKN8	G5BNL2	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.590
EIF4A3	Utp3	G5AKN8	G5BN00	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	Something about silencing protein 10.	0.598
EIF4A3	Wdr3	G5AKN8	G5B2R7	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	WD repeat-containing protein 3.	0.491
Esf1	Abt1	G5ALV3	G5ARP5	ESF1-like protein.	Activator of basal transcription 1.	0.984
Esf1	EIF4A3	G5ALV3	G5AKN8	ESF1-like protein.	Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.	0.554
Esf1	GW7_03178	G5ALV3	G5AWT3	ESF1-like protein.	Nucleolar complex protein 4-like protein.	0.764
Esf1	GW7_10623	G5ALV3	G5C8R8	ESF1-like protein.	Nucleolar MIF4G domain-containing protein 1.	0.972
Esf1	MPHOSPH10	G5ALV3	G5B6I1	ESF1-like protein.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.960