STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_024191Luc7 3. (177 aa)    
Predicted Functional Partners:
BpHYR1_053328
RNA-binding 25-like.
   
 0.985
BpHYR1_009215
Uncharacterized protein.
   
  
 0.923
BpHYR1_008447
U4 tri-snRNP-associated 1.
    
 0.919
BpHYR1_033963
Transcription elongation regulator 1.
   
  0.911
BpHYR1_022762
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.899
BpHYR1_022211
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.892
BpHYR1_004052
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.889
BpHYR1_050220
Nuclear cap-binding protein subunit 2.
    
 
 0.887
BpHYR1_050436
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
    
 0.873
BpHYR1_006783
Putative small nuclear ribonucleo F.
   
 
 0.873
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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