BpHYR1_040871 protein (Brachionus plicatilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BpHYR1_040871

Mannose-P-dolichol utilization defect 1. (233 aa)

Predicted Functional Partners:

BpHYR1_052175

0.630

BpHYR1_049208

0.616

BpHYR1_007992

0.577

BpHYR1_006564

0.549

BpHYR1_035471

0.547

BpHYR1_054051

0.543

BpHYR1_042983

0.538

BpHYR1_015142

0.538

BpHYR1_021411

0.538

BpHYR1_012959

0.530

Your Current Organism:

Brachionus plicatilis

NCBI taxonomy Id: 10195
Other names: B. plicatilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BpHYR1_006564	BpHYR1_040871	A0A3M7QDJ8	A0A3M7P8Z8	Fragile X mental retardation syndrome-related 1 isoform X2.	Mannose-P-dolichol utilization defect 1.	0.549
BpHYR1_007992	BpHYR1_040871	A0A3M7R366	A0A3M7P8Z8	Dolichyldiphosphatase 1-like.	Mannose-P-dolichol utilization defect 1.	0.577
BpHYR1_007992	BpHYR1_049208	A0A3M7R366	A0A3M7QBB5	Dolichyldiphosphatase 1-like.	Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.	0.880
BpHYR1_007992	BpHYR1_052175	A0A3M7R366	A0A3M7S4J9	Dolichyldiphosphatase 1-like.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.913
BpHYR1_012959	BpHYR1_015142	A0A3M7RBU6	A0A3M7Q510	Phosphatidylinositol glycan anchor biosynthesis class U.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.998
BpHYR1_012959	BpHYR1_021411	A0A3M7RBU6	A0A3M7SQK5	Phosphatidylinositol glycan anchor biosynthesis class U.	Phosphatidylinositol class O.	0.932
BpHYR1_012959	BpHYR1_040871	A0A3M7RBU6	A0A3M7P8Z8	Phosphatidylinositol glycan anchor biosynthesis class U.	Mannose-P-dolichol utilization defect 1.	0.530
BpHYR1_012959	BpHYR1_042983	A0A3M7RBU6	A0A3M7PNS3	Phosphatidylinositol glycan anchor biosynthesis class U.	Glycosylphosphatidylinositol anchor attachment 1 isoform X1.	0.998
BpHYR1_012959	BpHYR1_049208	A0A3M7RBU6	A0A3M7QBB5	Phosphatidylinositol glycan anchor biosynthesis class U.	Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.	0.526
BpHYR1_012959	BpHYR1_052175	A0A3M7RBU6	A0A3M7S4J9	Phosphatidylinositol glycan anchor biosynthesis class U.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.560
BpHYR1_012959	BpHYR1_054051	A0A3M7RBU6	A0A3M7SDE7	Phosphatidylinositol glycan anchor biosynthesis class U.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.572
BpHYR1_015142	BpHYR1_012959	A0A3M7Q510	A0A3M7RBU6	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Phosphatidylinositol glycan anchor biosynthesis class U.	0.998
BpHYR1_015142	BpHYR1_021411	A0A3M7Q510	A0A3M7SQK5	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Phosphatidylinositol class O.	0.943
BpHYR1_015142	BpHYR1_040871	A0A3M7Q510	A0A3M7P8Z8	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Mannose-P-dolichol utilization defect 1.	0.538
BpHYR1_015142	BpHYR1_042983	A0A3M7Q510	A0A3M7PNS3	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Glycosylphosphatidylinositol anchor attachment 1 isoform X1.	0.999
BpHYR1_015142	BpHYR1_049208	A0A3M7Q510	A0A3M7QBB5	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Dolichol-phosphate mannosyltransferase subunit 3; Stabilizer subunit of the dolichol-phosphate mannose (DPM) synthase complex; tethers catalytic subunit to the ER. Belongs to the DPM3 family.	0.538
BpHYR1_015142	BpHYR1_052175	A0A3M7Q510	A0A3M7S4J9	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Dolichol-phosphate mannosyltransferase subunit 1; Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins.	0.596
BpHYR1_015142	BpHYR1_054051	A0A3M7Q510	A0A3M7SDE7	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	GPI mannosyltransferase 2; Mannosyltransferase involved in glycosylphosphatidylinositol- anchor biosynthesis.	0.659
BpHYR1_021411	BpHYR1_012959	A0A3M7SQK5	A0A3M7RBU6	Phosphatidylinositol class O.	Phosphatidylinositol glycan anchor biosynthesis class U.	0.932
BpHYR1_021411	BpHYR1_015142	A0A3M7SQK5	A0A3M7Q510	Phosphatidylinositol class O.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.943