STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_019407Serine arginine-rich splicing factor 7-like isoform X1. (184 aa)    
Predicted Functional Partners:
BpHYR1_045416
Serine arginine-rich splicing factor 1B.
   
0.925
BpHYR1_002368
Serine arginine-rich splicing factor 3 isoform X2.
  
0.855
BpHYR1_002367
Serine arginine-rich splicing factor 3.
   
0.847
BpHYR1_027995
Transformer-2-like protein.
  
 0.843
BpHYR1_015131
Polyadenylate-binding 2 isoform X1.
  
 0.823
BpHYR1_013204
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.815
BpHYR1_003692
Putative splicing arginine serine-rich 5 isoform X1.
   
0.799
BpHYR1_035841
U1 small nuclear ribonucleo 70 kDa.
  
 0.788
BpHYR1_013206
U11 U12 small nuclear ribonucleo 35 kDa.
  
 0.784
BpHYR1_050220
Nuclear cap-binding protein subunit 2.
  
 0.781
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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