STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_047366U3 small nucleolar ribonucleo IMP4. (292 aa)    
Predicted Functional Partners:
BpHYR1_010588
WD repeat-containing 43-like.
   
  0.999
BpHYR1_019778
Cirhin.
   
  0.999
BpHYR1_026698
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
 0.999
BpHYR1_009975
U3 small nucleolar ribonucleo IMP3.
   
 0.999
BpHYR1_017132
Bystin.
   
 
 0.999
BpHYR1_019675
WD repeat-containing 46.
   
   0.998
BpHYR1_047475
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
 
 0.998
BpHYR1_016161
Nucleolar complex 4-like protein.
   
 
 0.998
BpHYR1_039238
Periodic tryptophan 2-like protein.
   
 
 0.998
BpHYR1_033871
RNA 3-terminal phosphate cyclase.
   
 
 0.998
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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