BpHYR1_053328 protein (Brachionus plicatilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BpHYR1_053328

RNA-binding 25-like. (387 aa)

Predicted Functional Partners:

BpHYR1_050436

0.993

BpHYR1_008447

0.992

BpHYR1_050220

0.990

BpHYR1_013550

0.988

BpHYR1_024191

0.985

BpHYR1_049296

0.985

BpHYR1_031762

0.984

BpHYR1_025355

0.982

BpHYR1_007744

0.981

BpHYR1_011958

0.980

Your Current Organism:

Brachionus plicatilis

NCBI taxonomy Id: 10195
Other names: B. plicatilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BpHYR1_007744	BpHYR1_011958	A0A3M7RPE6	A0A3M7PTW5	Serine arginine repetitive matrix 1 isoform X3.	Nuclear cap-binding subunit 1-like.	0.920
BpHYR1_007744	BpHYR1_013550	A0A3M7RPE6	A0A3M7P1U7	Serine arginine repetitive matrix 1 isoform X3.	U2 small nuclear ribonucleo A.	0.781
BpHYR1_007744	BpHYR1_024191	A0A3M7RPE6	A0A3M7P3Y5	Serine arginine repetitive matrix 1 isoform X3.	Luc7 3.	0.406
BpHYR1_007744	BpHYR1_025355	A0A3M7RPE6	A0A3M7RSJ5	Serine arginine repetitive matrix 1 isoform X3.	Putative ATP-dependent RNA helicase DDX46.	0.771
BpHYR1_007744	BpHYR1_031762	A0A3M7RPE6	A0A3M7QQ65	Serine arginine repetitive matrix 1 isoform X3.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.856
BpHYR1_007744	BpHYR1_049296	A0A3M7RPE6	A0A3M7QHA9	Serine arginine repetitive matrix 1 isoform X3.	Luc7 3.	0.406
BpHYR1_007744	BpHYR1_050220	A0A3M7RPE6	A0A3M7RK40	Serine arginine repetitive matrix 1 isoform X3.	Nuclear cap-binding protein subunit 2.	0.891
BpHYR1_007744	BpHYR1_053328	A0A3M7RPE6	A0A3M7PI62	Serine arginine repetitive matrix 1 isoform X3.	RNA-binding 25-like.	0.981
BpHYR1_008447	BpHYR1_011958	A0A3M7S2Q8	A0A3M7PTW5	U4 tri-snRNP-associated 1.	Nuclear cap-binding subunit 1-like.	0.968
BpHYR1_008447	BpHYR1_013550	A0A3M7S2Q8	A0A3M7P1U7	U4 tri-snRNP-associated 1.	U2 small nuclear ribonucleo A.	0.991
BpHYR1_008447	BpHYR1_024191	A0A3M7S2Q8	A0A3M7P3Y5	U4 tri-snRNP-associated 1.	Luc7 3.	0.919
BpHYR1_008447	BpHYR1_025355	A0A3M7S2Q8	A0A3M7RSJ5	U4 tri-snRNP-associated 1.	Putative ATP-dependent RNA helicase DDX46.	0.688
BpHYR1_008447	BpHYR1_031762	A0A3M7S2Q8	A0A3M7QQ65	U4 tri-snRNP-associated 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.796
BpHYR1_008447	BpHYR1_049296	A0A3M7S2Q8	A0A3M7QHA9	U4 tri-snRNP-associated 1.	Luc7 3.	0.919
BpHYR1_008447	BpHYR1_050220	A0A3M7S2Q8	A0A3M7RK40	U4 tri-snRNP-associated 1.	Nuclear cap-binding protein subunit 2.	0.762
BpHYR1_008447	BpHYR1_050436	A0A3M7S2Q8	A0A3M7R838	U4 tri-snRNP-associated 1.	U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.	0.889
BpHYR1_008447	BpHYR1_053328	A0A3M7S2Q8	A0A3M7PI62	U4 tri-snRNP-associated 1.	RNA-binding 25-like.	0.992
BpHYR1_011958	BpHYR1_007744	A0A3M7PTW5	A0A3M7RPE6	Nuclear cap-binding subunit 1-like.	Serine arginine repetitive matrix 1 isoform X3.	0.920
BpHYR1_011958	BpHYR1_008447	A0A3M7PTW5	A0A3M7S2Q8	Nuclear cap-binding subunit 1-like.	U4 tri-snRNP-associated 1.	0.968
BpHYR1_011958	BpHYR1_013550	A0A3M7PTW5	A0A3M7P1U7	Nuclear cap-binding subunit 1-like.	U2 small nuclear ribonucleo A.	0.910