STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_0101825-3 exoribonuclease 2. (224 aa)    
Predicted Functional Partners:
BpHYR1_014321
Decapping and exoribonuclease.
   
 
 0.956
BpHYR1_005372
Fas-binding factor.
    
 
 0.897
BpHYR1_006547
Regulation of nuclear pre-mRNA domain-containing 1B-like isoform X1.
    
 
 0.897
BpHYR1_046099
Regulation of nuclear pre-mRNA domain-containing 2-like.
   
 
 0.803
BpHYR1_045010
Uncharacterized protein.
    
 
 0.797
BpHYR1_031869
RRP5-like protein.
   
 0.738
BpHYR1_034572
Small subunit processome component 20-like protein.
   
  0.733
BpHYR1_034571
Small subunit processome component 20-like protein.
   
  0.733
BpHYR1_014213
Ribosomal RNA-processing 7-like protein.
   
  0.733
BpHYR1_006819
Putative ATP-dependent RNA helicase DDX47; Belongs to the DEAD box helicase family.
   
 0.728
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.