STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_010521G patch domain-containing 4. (219 aa)    
Predicted Functional Partners:
BpHYR1_003958
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 
 0.939
BpHYR1_019675
WD repeat-containing 46.
   
   0.933
BpHYR1_017132
Bystin.
   
   0.925
BpHYR1_054156
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
   0.916
BpHYR1_009216
rRNA 2-O-methyltransferase fibrillarin.
   
   0.914
BpHYR1_017004
Nucleolar MIF4G domain-containing 1.
   
   0.911
BpHYR1_041880
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
   
   0.908
BpHYR1_041645
Protein MAK16 homolog; Belongs to the MAK16 family.
   
   0.874
BpHYR1_041652
Surfeit locus 6-like protein.
   
 
 0.835
BpHYR1_029364
Casein kinase II subunit alpha isoform X2; Belongs to the protein kinase superfamily.
    
 
 0.774
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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