STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_029394DNA polymerase subunit gamma-1. (329 aa)    
Predicted Functional Partners:
BpHYR1_000162
Twinkle mitochondrial.
   
 
 0.841
BpHYR1_011045
Ribonuclease H1; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
    
 0.793
BpHYR1_047671
Fanconi anemia group M isoform X1.
   
 
 0.774
BpHYR1_047678
Fanconi anemia group M.
   
 
 0.774
BpHYR1_035182
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
  
 0.766
BpHYR1_053908
Glycyl-tRNA synthetase.
   
 
 0.756
BpHYR1_025215
Glycine--tRNA ligase.
   
 
 0.756
BpHYR1_001797
DNA repair RAD50.
  
 
 0.712
BpHYR1_007123
Fanconi anemia group I.
   
 0.675
BpHYR1_029393
DNA polymerase subunit gamma-1.
  
  
  0.674
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.