STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_029652U5 small nuclear ribonucleo helicase-like protein. (239 aa)    
Predicted Functional Partners:
BpHYR1_029171
Pre-mRNA-processing-splicing factor 8.
   
 0.990
BpHYR1_039723
U5 small nuclear ribonucleo component-like protein.
   
 0.973
BpHYR1_019555
Pre-mRNA-processing factor 6.
   
 0.971
BpHYR1_034001
Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.
   
 0.968
BpHYR1_008499
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.961
BpHYR1_006783
Putative small nuclear ribonucleo F.
   
 0.959
BpHYR1_004052
Small nuclear ribonucleoprotein Sm D3.
   
 0.955
BpHYR1_048405
U5 small nuclear ribonucleo 40 kDa.
   
 0.955
BpHYR1_022762
Small nuclear ribonucleoprotein Sm D2.
   
 0.953
BpHYR1_040624
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.950
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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