STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_033186Sin3 histone deacetylase corepressor complex component SDS3. (368 aa)    
Predicted Functional Partners:
BpHYR1_039363
AT-rich interactive domain-containing 4B.
   
 0.992
BpHYR1_001181
PHD finger 20 1 isoform X3.
    
 0.924
BpHYR1_017986
Paired amphipathic helix Sin3a isoform X2.
   
 0.918
BpHYR1_008955
Paired amphipathic helix Sin3a.
   
 0.918
BpHYR1_002696
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.917
BpHYR1_048346
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.917
BpHYR1_023998
Histone deacetylase 8-like.
    
 0.917
BpHYR1_014087
Histone-binding RBBP4 isoform X2.
    
 0.888
BpHYR1_004147
Histone-binding RBBP4 isoform X2.
    
 0.888
BpHYR1_009539
Histone deacetylase complex subunit SAP18.
     
 0.831
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.