STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_045467DNA polymerase lambda. (1076 aa)    
Predicted Functional Partners:
BpHYR1_011018
DNA repair XRCC1.
   
 0.862
BpHYR1_038412
DNA repair XRCC1-like.
   
 0.862
BpHYR1_012901
DNA ligase 4; Belongs to the ATP-dependent DNA ligase family.
  
 0.831
BpHYR1_010695
DNA ligase 3; Belongs to the ATP-dependent DNA ligase family.
  
 0.821
BpHYR1_013141
DNA ligase.
  
 0.807
BpHYR1_045447
DNA ligase 1.
  
 0.807
BpHYR1_004763
X-ray repair cross-complementing.
    
 0.805
BpHYR1_022476
Meiotic recombination REC114-like protein.
    
 0.780
BpHYR1_005164
Bifunctional polynucleotide phosphatase kinase-like.
    
 0.780
BpHYR1_026730
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
   
 0.752
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.