STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_012997Ubiquitin carboxyl-terminal hydrolase. (890 aa)    
Predicted Functional Partners:
BpHYR1_044758
TNF receptor-associated factor 6.
    
 0.781
BpHYR1_033997
Beta-arrestin-1 isoform X2.
    
 0.780
BpHYR1_013463
AN1-type zinc finger 4 isoform X1.
   
 0.767
BpHYR1_040280
Roundabout-like protein.
    
 0.763
BpHYR1_054326
Replication factor C subunit 5.
    
 0.758
BpHYR1_041824
Ubiquitin-60S ribosomal L40.
    
  0.718
BpHYR1_036213
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.706
BpHYR1_035922
Baculoviral IAP repeat-containing 7-like.
    
 0.697
BpHYR1_017405
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.691
BpHYR1_036970
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.691
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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