STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_022536Ubiquitin conjugation factor E4 B isoform X3. (504 aa)    
Predicted Functional Partners:
BpHYR1_052182
E3 ubiquitin-ligase TRIP12-like isoform X4.
   
 0.990
BpHYR1_013548
UV excision repair RAD23-like protein.
   
 0.958
BpHYR1_033636
Ubiquitin fusion degradation 1-like protein.
    
 
 0.947
BpHYR1_049355
Nuclear localization 4-like protein.
    
 
 0.942
BpHYR1_026982
Baculoviral IAP repeat-containing.
   
 0.942
BpHYR1_027014
Baculoviral IAP repeat-containing 6.
   
 0.942
BpHYR1_003905
Baculoviral IAP repeat-containing 6-like isoform X15.
   
 0.942
BpHYR1_022580
Ubiquitin thioesterase OTU1.
    
 
 0.938
BpHYR1_012615
Ubiquilin-1 isoform X1.
   
 0.937
BpHYR1_035033
NSFL1 cofactor p47 isoform X2.
    
 
 0.904
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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