STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_046095E3 ubiquitin-ligase listerin. (1727 aa)    
Predicted Functional Partners:
BpHYR1_052182
E3 ubiquitin-ligase TRIP12-like isoform X4.
   
 
 0.972
BpHYR1_032757
Nuclear export mediator factor NEMF.
    
 
 0.929
BpHYR1_032760
Nuclear export mediator factor NEMF isoform X1.
    
 
 0.929
BpHYR1_053600
60S ribosomal protein L6; Belongs to the eukaryotic ribosomal protein eL6 family.
    
   0.854
BpHYR1_036071
60S ribosomal L8.
    
   0.852
BpHYR1_041184
60S ribosomal L23a; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.837
BpHYR1_041824
Ubiquitin-60S ribosomal L40.
    
  0.836
BpHYR1_042109
Transcription factor 25.
   
 
 0.833
BpHYR1_045283
60S ribosomal L13A.
    
   0.833
BpHYR1_013799
60S ribosomal L11; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.817
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.