STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_004551Transport Sec16A. (584 aa)    
Predicted Functional Partners:
BpHYR1_030801
SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.982
BpHYR1_017261
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.974
BpHYR1_031867
Transport Sec24C-like isoform X1.
   
 0.948
BpHYR1_028452
Transport Sec24C-like isoform X1.
   
 0.942
BpHYR1_003392
Transport Sec24A-like.
   
 0.936
BpHYR1_005886
Transport Sec24A isoform X2.
   
 0.936
BpHYR1_044757
Transport Sec31A.
   
 0.930
BpHYR1_005900
Transport Sec24A-like isoform X1.
   
 0.921
BpHYR1_053225
Ankyrin repeat domain-containing 40-like.
   
 0.887
BpHYR1_037132
Type A von Willebrand factor domain-containing.
   
 0.861
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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