STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_013311Retinoic acid receptor beta isoform X5. (215 aa)    
Predicted Functional Partners:
BpHYR1_026177
Retinoic acid receptor RXR.
  
0.936
BpHYR1_046337
Nuclear receptor corepressor 1-like.
    
 0.872
BpHYR1_008284
Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.869
BpHYR1_039635
Uncharacterized protein.
  
 
 0.711
BpHYR1_020463
Pre-mRNA-splicing factor RBM22.
   
 0.707
BpHYR1_035833
Aryl hydrocarbon receptor nuclear translocator-like protein.
  
 
 0.706
BpHYR1_046097
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.666
BpHYR1_027041
NAD-dependent deacetylase sirtuin-1-like.
    
 0.633
BpHYR1_038901
Nuclear receptor subfamily 4 group A member.
    
 
0.631
BpHYR1_030326
Transcription factor AP-1.
    
 0.621
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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