STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_042118H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (225 aa)    
Predicted Functional Partners:
BpHYR1_000246
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.999
BpHYR1_004413
H ACA ribonucleo complex subunit 4.
   
 0.999
BpHYR1_004924
H ACA ribonucleo complex subunit 3.
   
 0.998
BpHYR1_009216
rRNA 2-O-methyltransferase fibrillarin.
   
 
 0.994
BpHYR1_054156
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
  
 0.982
BpHYR1_039353
SHQ1-like protein.
   
 
 0.979
BpHYR1_047162
Nucleolar 56.
   
 
 0.974
BpHYR1_038941
Nucleolar 58.
  
 
 0.973
BpHYR1_037296
60S ribosomal L7a.
  
 0.973
BpHYR1_048056
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
  
 0.973
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.