STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_016230Nuclear pore complex Nup98-Nup96 isoform X1. (1917 aa)    
Predicted Functional Partners:
BpHYR1_022734
E3 SUMO-ligase 2-like.
   
 0.998
BpHYR1_032972
Nuclear pore protein.
   
 0.973
BpHYR1_047895
Nucleoporin seh1-A; Belongs to the WD repeat SEC13 family.
   
 0.971
BpHYR1_008994
mRNA export factor.
   
 0.971
BpHYR1_030801
SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.971
BpHYR1_044310
Nuclear pore complex protein Nup133-like.
   
 0.971
BpHYR1_010725
Nucleoporin p54 isoform X2.
   
0.970
BpHYR1_001735
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.969
BpHYR1_011764
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.968
BpHYR1_052983
Nuclear pore complex protein Nup214-like.
   
0.968
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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