BpHYR1_036717 protein (Brachionus plicatilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BpHYR1_036717

Tubulin alpha. (97 aa)

Predicted Functional Partners:

BpHYR1_006593

0.881

BpHYR1_035183

0.881

BpHYR1_018436

0.860

BpHYR1_007088

0.860

BpHYR1_045757

0.857

BpHYR1_025446

0.822

BpHYR1_024381

0.787

BpHYR1_002419

0.787

BpHYR1_047480

0.787

BpHYR1_036475

0.781

Your Current Organism:

Brachionus plicatilis

NCBI taxonomy Id: 10195
Other names: B. plicatilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BpHYR1_002419	BpHYR1_006593	A0A3M7PQY2	A0A3M7SFV5	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Putative serine threonine-kinase pats1.	0.871
BpHYR1_002419	BpHYR1_007088	A0A3M7PQY2	A0A3M7SY52	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Serine threonine-kinase DCLK2-like isoform X1.	0.864
BpHYR1_002419	BpHYR1_018436	A0A3M7PQY2	A0A3M7QNG6	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Serine threonine-kinase DCLK2-like isoform X1.	0.864
BpHYR1_002419	BpHYR1_035183	A0A3M7PQY2	A0A3M7T9T0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Leucine-rich repeat serine threonine-kinase 1.	0.871
BpHYR1_002419	BpHYR1_036717	A0A3M7PQY2	A0A3M7RL46	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin alpha.	0.787
BpHYR1_002419	BpHYR1_045757	A0A3M7PQY2	A0A3M7RE44	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	WD repeat-containing 90.	0.893
BpHYR1_006593	BpHYR1_002419	A0A3M7SFV5	A0A3M7PQY2	Putative serine threonine-kinase pats1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.871
BpHYR1_006593	BpHYR1_007088	A0A3M7SFV5	A0A3M7SY52	Putative serine threonine-kinase pats1.	Serine threonine-kinase DCLK2-like isoform X1.	0.833
BpHYR1_006593	BpHYR1_018436	A0A3M7SFV5	A0A3M7QNG6	Putative serine threonine-kinase pats1.	Serine threonine-kinase DCLK2-like isoform X1.	0.833
BpHYR1_006593	BpHYR1_024381	A0A3M7SFV5	A0A3M7PCZ7	Putative serine threonine-kinase pats1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.871
BpHYR1_006593	BpHYR1_025446	A0A3M7SFV5	A0A3M7SZH5	Putative serine threonine-kinase pats1.	Beta.	0.871
BpHYR1_006593	BpHYR1_035183	A0A3M7SFV5	A0A3M7T9T0	Putative serine threonine-kinase pats1.	Leucine-rich repeat serine threonine-kinase 1.	0.999
BpHYR1_006593	BpHYR1_036475	A0A3M7SFV5	A0A3M7P3J2	Putative serine threonine-kinase pats1.	Tubulin beta.	0.871
BpHYR1_006593	BpHYR1_036717	A0A3M7SFV5	A0A3M7RL46	Putative serine threonine-kinase pats1.	Tubulin alpha.	0.881
BpHYR1_006593	BpHYR1_045757	A0A3M7SFV5	A0A3M7RE44	Putative serine threonine-kinase pats1.	WD repeat-containing 90.	0.996
BpHYR1_006593	BpHYR1_047480	A0A3M7SFV5	A0A3M7QEY0	Putative serine threonine-kinase pats1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.871
BpHYR1_007088	BpHYR1_002419	A0A3M7SY52	A0A3M7PQY2	Serine threonine-kinase DCLK2-like isoform X1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.864
BpHYR1_007088	BpHYR1_006593	A0A3M7SY52	A0A3M7SFV5	Serine threonine-kinase DCLK2-like isoform X1.	Putative serine threonine-kinase pats1.	0.833
BpHYR1_007088	BpHYR1_018436	A0A3M7SY52	A0A3M7QNG6	Serine threonine-kinase DCLK2-like isoform X1.	Serine threonine-kinase DCLK2-like isoform X1.	0.764
BpHYR1_007088	BpHYR1_024381	A0A3M7SY52	A0A3M7PCZ7	Serine threonine-kinase DCLK2-like isoform X1.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.864