Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BpHYR1_002598 | BpHYR1_015889 | A0A3M7PS28 | A0A3M7Q1L3 | DNA-directed RNA polymerase II subunit RPB3. | General transcription factor IIF subunit 2-like. | 0.996 |
BpHYR1_002598 | BpHYR1_026175 | A0A3M7PS28 | A0A3M7T8S6 | DNA-directed RNA polymerase II subunit RPB3. | Transcription initiation factor IIB. | 0.981 |
BpHYR1_002598 | BpHYR1_026178 | A0A3M7PS28 | A0A3M7T8H7 | DNA-directed RNA polymerase II subunit RPB3. | Transcription initiation factor IIB. | 0.981 |
BpHYR1_002598 | BpHYR1_026857 | A0A3M7PS28 | A0A3M7RPD7 | DNA-directed RNA polymerase II subunit RPB3. | Activated RNA polymerase II transcriptional coactivator p15. | 0.542 |
BpHYR1_002598 | BpHYR1_032261 | A0A3M7PS28 | A0A3M7SP57 | DNA-directed RNA polymerase II subunit RPB3. | Cleavage stimulation factor subunit 2 tau variant. | 0.837 |
BpHYR1_002598 | BpHYR1_037393 | A0A3M7PS28 | A0A3M7SPQ1 | DNA-directed RNA polymerase II subunit RPB3. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.580 |
BpHYR1_002598 | BpHYR1_038152 | A0A3M7PS28 | A0A3M7QN95 | DNA-directed RNA polymerase II subunit RPB3. | Transcription elongation factor SPT5 isoform X1. | 0.997 |
BpHYR1_015889 | BpHYR1_002598 | A0A3M7Q1L3 | A0A3M7PS28 | General transcription factor IIF subunit 2-like. | DNA-directed RNA polymerase II subunit RPB3. | 0.996 |
BpHYR1_015889 | BpHYR1_026175 | A0A3M7Q1L3 | A0A3M7T8S6 | General transcription factor IIF subunit 2-like. | Transcription initiation factor IIB. | 0.983 |
BpHYR1_015889 | BpHYR1_026178 | A0A3M7Q1L3 | A0A3M7T8H7 | General transcription factor IIF subunit 2-like. | Transcription initiation factor IIB. | 0.983 |
BpHYR1_015889 | BpHYR1_026857 | A0A3M7Q1L3 | A0A3M7RPD7 | General transcription factor IIF subunit 2-like. | Activated RNA polymerase II transcriptional coactivator p15. | 0.526 |
BpHYR1_015889 | BpHYR1_032261 | A0A3M7Q1L3 | A0A3M7SP57 | General transcription factor IIF subunit 2-like. | Cleavage stimulation factor subunit 2 tau variant. | 0.621 |
BpHYR1_015889 | BpHYR1_038152 | A0A3M7Q1L3 | A0A3M7QN95 | General transcription factor IIF subunit 2-like. | Transcription elongation factor SPT5 isoform X1. | 0.977 |
BpHYR1_018325 | BpHYR1_026857 | A0A3M7SPE3 | A0A3M7RPD7 | Small acidic-like. | Activated RNA polymerase II transcriptional coactivator p15. | 0.630 |
BpHYR1_026175 | BpHYR1_002598 | A0A3M7T8S6 | A0A3M7PS28 | Transcription initiation factor IIB. | DNA-directed RNA polymerase II subunit RPB3. | 0.981 |
BpHYR1_026175 | BpHYR1_015889 | A0A3M7T8S6 | A0A3M7Q1L3 | Transcription initiation factor IIB. | General transcription factor IIF subunit 2-like. | 0.983 |
BpHYR1_026175 | BpHYR1_026857 | A0A3M7T8S6 | A0A3M7RPD7 | Transcription initiation factor IIB. | Activated RNA polymerase II transcriptional coactivator p15. | 0.617 |
BpHYR1_026175 | BpHYR1_032261 | A0A3M7T8S6 | A0A3M7SP57 | Transcription initiation factor IIB. | Cleavage stimulation factor subunit 2 tau variant. | 0.449 |
BpHYR1_026175 | BpHYR1_038152 | A0A3M7T8S6 | A0A3M7QN95 | Transcription initiation factor IIB. | Transcription elongation factor SPT5 isoform X1. | 0.818 |
BpHYR1_026178 | BpHYR1_002598 | A0A3M7T8H7 | A0A3M7PS28 | Transcription initiation factor IIB. | DNA-directed RNA polymerase II subunit RPB3. | 0.981 |
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