STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_034911Ceramide phosphoethanolamine synthase-like isoform X3. (317 aa)    
Predicted Functional Partners:
BpHYR1_044022
Pre-mRNA-splicing factor SLU7.
    
 0.917
BpHYR1_035918
Pre-mRNA-splicing factor CWC22-like protein.
   
 0.915
BpHYR1_044731
Pre-mRNA-splicing factor syf2.
    
 0.909
BpHYR1_050721
U3 small nucleolar RNA-associated 14-like protein.
   
 0.886
BpHYR1_000365
Something about silencing 10.
   
 0.884
BpHYR1_010640
Putative ATP-dependent RNA helicase DDX49; Belongs to the DEAD box helicase family.
  
 0.883
BpHYR1_024874
Digestive organ expansion factor-like protein.
   
 0.870
BpHYR1_030276
Serine arginine repetitive matrix 2-like isoform X1.
    
 0.867
BpHYR1_022762
Small nuclear ribonucleoprotein Sm D2.
   
 0.865
BpHYR1_005581
Pre-mRNA-splicing factor 18.
   
 0.864
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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