STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_003958Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15. (740 aa)    
Predicted Functional Partners:
BpHYR1_013550
U2 small nuclear ribonucleo A.
   
 0.997
BpHYR1_037960
Tuftelin-interacting 11.
   
 0.997
BpHYR1_053505
Splicing factor 45.
   
 0.997
BpHYR1_000365
Something about silencing 10.
   
 0.996
BpHYR1_004052
Small nuclear ribonucleoprotein Sm D3.
   
 0.992
BpHYR1_038941
Nucleolar 58.
   
 
 0.990
BpHYR1_006783
Putative small nuclear ribonucleo F.
   
 0.990
BpHYR1_022762
Small nuclear ribonucleoprotein Sm D2.
   
 0.988
BpHYR1_047309
Cell division cycle 5.
   
 0.988
BpHYR1_040624
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.987
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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