STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_005717E3 ubiquitin-ligase KCMF1. (425 aa)    
Predicted Functional Partners:
BpHYR1_053336
E3 ubiquitin-ligase UBR4-like.
    
 
 0.816
BpHYR1_037838
E3 ubiquitin-ligase UBR4.
    
 
 0.816
BpHYR1_014039
Purity of essence isoform X3.
    
 
 0.816
BpHYR1_000445
Cullin-3 isoform X1; Belongs to the cullin family.
   
  
 0.447
BpHYR1_037962
Ubiquitin-conjugating enzyme E2 R2; Belongs to the ubiquitin-conjugating enzyme family.
   
 
 0.422
BpHYR1_025769
Ubiquitin-ligase E3C.
   
  
 0.414
BpHYR1_010969
Heterogeneous nuclear ribonucleo K isoform X1.
      
 0.402
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.