STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_029471RNA polymerase II subunit B1 CTD phosphatase. (549 aa)    
Predicted Functional Partners:
BpHYR1_008502
DNA-directed RNA polymerase II subunit RPB7.
    
 0.992
BpHYR1_020396
DNA-directed RNA polymerase II subunit RPB4.
    
 0.991
BpHYR1_025447
DNA-directed RNA polymerase II subunit RPB11-a.
    
 0.990
BpHYR1_009753
DNA-directed RNA polymerases and III subunit RPABC1.
    
 0.990
BpHYR1_036539
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.989
BpHYR1_002598
DNA-directed RNA polymerase II subunit RPB3.
    
 0.988
BpHYR1_024875
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
 0.986
BpHYR1_049359
DNA-directed RNA polymerases and III subunit RPABC5.
    
 0.983
BpHYR1_039368
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
    
 
 0.969
BpHYR1_001595
Hinderin isoform X2.
   
    0.967
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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