BpHYR1_001230 protein (Brachionus plicatilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BpHYR1_001230

Transmembrane emp24 domain-containing 5-like. (219 aa)

Predicted Functional Partners:

BpHYR1_024416

0.736

BpHYR1_045685

0.669

BpHYR1_039470

0.646

BpHYR1_005256

0.573

BpHYR1_014496

0.549

BpHYR1_012569

0.538

BpHYR1_047156

0.538

BpHYR1_010124

0.538

BpHYR1_011844

0.538

BpHYR1_053136

0.538

Your Current Organism:

Brachionus plicatilis

NCBI taxonomy Id: 10195
Other names: B. plicatilis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BpHYR1_001230	BpHYR1_005256	A0A3M7S5E7	A0A3M7Q2C8	Transmembrane emp24 domain-containing 5-like.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.573
BpHYR1_001230	BpHYR1_010124	A0A3M7S5E7	A0A3M7R9G6	Transmembrane emp24 domain-containing 5-like.	TraB domain-containing-like.	0.538
BpHYR1_001230	BpHYR1_011844	A0A3M7S5E7	A0A3M7RE57	Transmembrane emp24 domain-containing 5-like.	Glycosyltransferase family 8.	0.538
BpHYR1_001230	BpHYR1_012569	A0A3M7S5E7	A0A3M7PID2	Transmembrane emp24 domain-containing 5-like.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier.	0.538
BpHYR1_001230	BpHYR1_014496	A0A3M7S5E7	A0A3M7QGJ3	Transmembrane emp24 domain-containing 5-like.	Osteopetrosis associated transmembrane.	0.549
BpHYR1_001230	BpHYR1_024416	A0A3M7S5E7	A0A3M7QHU7	Transmembrane emp24 domain-containing 5-like.	Transmembrane emp24 domain-containing 10.	0.736
BpHYR1_001230	BpHYR1_039470	A0A3M7S5E7	A0A3M7QDZ1	Transmembrane emp24 domain-containing 5-like.	Transmembrane emp24 domain-containing eca.	0.646
BpHYR1_001230	BpHYR1_045685	A0A3M7S5E7	A0A3M7QFR4	Transmembrane emp24 domain-containing 5-like.	Transmembrane emp24 domain-containing 2 isoform X2.	0.669
BpHYR1_001230	BpHYR1_047156	A0A3M7S5E7	A0A3M7QBQ3	Transmembrane emp24 domain-containing 5-like.	Conserved oligomeric Golgi complex subunit 8.	0.538
BpHYR1_001230	BpHYR1_053136	A0A3M7S5E7	A0A3M7SEW0	Transmembrane emp24 domain-containing 5-like.	Tetratricopeptide repeat 7B isoform X2.	0.538
BpHYR1_005256	BpHYR1_001230	A0A3M7Q2C8	A0A3M7S5E7	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Transmembrane emp24 domain-containing 5-like.	0.573
BpHYR1_005256	BpHYR1_047156	A0A3M7Q2C8	A0A3M7QBQ3	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	Conserved oligomeric Golgi complex subunit 8.	0.534
BpHYR1_010124	BpHYR1_001230	A0A3M7R9G6	A0A3M7S5E7	TraB domain-containing-like.	Transmembrane emp24 domain-containing 5-like.	0.538
BpHYR1_010124	BpHYR1_011844	A0A3M7R9G6	A0A3M7RE57	TraB domain-containing-like.	Glycosyltransferase family 8.	0.529
BpHYR1_010124	BpHYR1_014496	A0A3M7R9G6	A0A3M7QGJ3	TraB domain-containing-like.	Osteopetrosis associated transmembrane.	0.627
BpHYR1_010124	BpHYR1_053136	A0A3M7R9G6	A0A3M7SEW0	TraB domain-containing-like.	Tetratricopeptide repeat 7B isoform X2.	0.538
BpHYR1_011844	BpHYR1_001230	A0A3M7RE57	A0A3M7S5E7	Glycosyltransferase family 8.	Transmembrane emp24 domain-containing 5-like.	0.538
BpHYR1_011844	BpHYR1_010124	A0A3M7RE57	A0A3M7R9G6	Glycosyltransferase family 8.	TraB domain-containing-like.	0.529
BpHYR1_011844	BpHYR1_012569	A0A3M7RE57	A0A3M7PID2	Glycosyltransferase family 8.	Ubiquitin-fold modifier 1; Ubiquitin-like modifier.	0.534
BpHYR1_011844	BpHYR1_014496	A0A3M7RE57	A0A3M7QGJ3	Glycosyltransferase family 8.	Osteopetrosis associated transmembrane.	0.546