STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_026081Translin-associated factor X-interacting 1-like. (472 aa)    
Predicted Functional Partners:
BpHYR1_039363
AT-rich interactive domain-containing 4B.
    
 0.837
BpHYR1_001181
PHD finger 20 1 isoform X3.
    
 0.830
BpHYR1_020390
RuvB-like helicase; Belongs to the RuvB family.
    
 0.789
BpHYR1_002598
DNA-directed RNA polymerase II subunit RPB3.
   
 0.776
BpHYR1_047671
Fanconi anemia group M isoform X1.
   
 0.731
BpHYR1_047678
Fanconi anemia group M.
   
 0.731
BpHYR1_020396
DNA-directed RNA polymerase II subunit RPB4.
    
 0.721
BpHYR1_049359
DNA-directed RNA polymerases and III subunit RPABC5.
    
  0.719
BpHYR1_024875
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
    
  0.713
BpHYR1_025447
DNA-directed RNA polymerase II subunit RPB11-a.
    
  0.713
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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