STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_039629DNA repair complementing XP-G cells. (879 aa)    
Predicted Functional Partners:
BpHYR1_023138
General transcription factor IIH subunit 1.
    
 0.993
BpHYR1_005936
TFIIH basal transcription factor complex helicase XPB subunit.
   
 0.991
BpHYR1_003439
DNA excision repair ERCC-6 isoform X1.
  
 0.991
BpHYR1_043215
Tfiih basal transcription factor complex helicase xpd subunit.
  
 0.980
BpHYR1_026730
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
  
 0.973
BpHYR1_025112
DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.
  
 0.973
BpHYR1_045132
General transcription factor IIH subunit.
    
 0.965
BpHYR1_012395
DNA repair endonuclease XPF.
   
 0.944
BpHYR1_047671
Fanconi anemia group M isoform X1.
   
 0.941
BpHYR1_047678
Fanconi anemia group M.
   
 0.941
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.