STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_024177ATP-dependent DNA helicase PIF1. (991 aa)    
Predicted Functional Partners:
BpHYR1_042223
Signal transducing adapter molecule 1.
    
 0.798
BpHYR1_013463
AN1-type zinc finger 4 isoform X1.
   
 0.762
BpHYR1_036213
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.760
BpHYR1_048466
Epidermal growth factor receptor.
    
 0.715
BpHYR1_041824
Ubiquitin-60S ribosomal L40.
    
 0.657
BpHYR1_030235
Abscission ut checkpoint regulator isoform X2.
   
 0.641
BpHYR1_040608
Zinc finger FYVE domain-containing 1-like.
   
 0.641
BpHYR1_003443
Hepatocyte growth factor-regulated tyrosine kinase substrate isoform X2.
   
 0.641
BpHYR1_041362
26S protease regulatory subunit 8; Belongs to the AAA ATPase family.
    
 0.634
BpHYR1_027450
Ubiquitin thioesterase OTUB1.
    
 0.602
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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