STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_042945Vesicle-associated membrane 8. (149 aa)    
Predicted Functional Partners:
BpHYR1_002343
Syntaxin-17.
   
 0.998
BpHYR1_039370
Synaptosomal-associated 29.
   
 0.996
BpHYR1_053882
Syntaxin-6 isoform X1; Belongs to the syntaxin family.
    
 0.995
BpHYR1_008811
Vesicle transport through interaction with t-SNAREs-like protein.
   
 0.994
BpHYR1_045387
Syntaxin-12; Belongs to the syntaxin family.
   
 0.992
BpHYR1_035091
Syntaxin-5; Belongs to the syntaxin family.
    
 0.990
BpHYR1_020603
Syntaxin-8.
    
 0.989
BpHYR1_045434
Vam6 Vps39 isoform X2.
    
 
 0.983
BpHYR1_010517
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.983
BpHYR1_049950
Vacuolar sorting-associated 41-like protein.
    
 
 0.982
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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