STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_036004DNA-directed RNA polymerase I subunit RPA2; Belongs to the RNA polymerase beta chain family. (492 aa)    
Predicted Functional Partners:
BpHYR1_009469
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.998
BpHYR1_035999
DNA-directed RNA polymerases I and III subunit RPAC1.
  
 0.992
BpHYR1_009753
DNA-directed RNA polymerases and III subunit RPABC1.
  
 0.989
BpHYR1_018028
RNA polymerase I-specific transcription initiation factor RRN3.
   
 0.984
BpHYR1_049359
DNA-directed RNA polymerases and III subunit RPABC5.
  
 0.983
BpHYR1_024875
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.981
BpHYR1_003471
DNA-directed RNA polymerases I and III subunit RPAC2-like.
  
 0.977
BpHYR1_017730
DNA-directed RNA polymerases and III subunit RPABC2.
  
 0.975
BpHYR1_017726
DNA-directed RNA polymerases and III subunit RPABC2.
  
 0.975
BpHYR1_008804
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.969
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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