STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_031498Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (85 aa)    
Predicted Functional Partners:
BpHYR1_010823
PHD finger-like domain-containing 5A.
   
 0.999
BpHYR1_001882
Splicing factor 3B subunit 6.
   
 0.999
BpHYR1_009053
Splicing factor 3B subunit 2.
    
 0.998
BpHYR1_017113
Splicing factor 3B subunit 4.
   
 0.998
BpHYR1_027362
Splicing factor 3A subunit 2.
   
 0.997
BpHYR1_022762
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
BpHYR1_024518
Splicing factor 3A subunit 3.
   
 0.996
BpHYR1_025355
Putative ATP-dependent RNA helicase DDX46.
    
 0.996
BpHYR1_013550
U2 small nuclear ribonucleo A.
   
 0.994
BpHYR1_025856
Small nuclear ribonucleoprotein G.
   
  0.994
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.