STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_021703Torsin-1A-interacting 2. (381 aa)    
Predicted Functional Partners:
BpHYR1_033149
Torsin.
    
 
 0.749
BpHYR1_040085
Torsin-1A-like.
    
 
 0.749
BpHYR1_001023
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
 
  0.595
BpHYR1_039370
Synaptosomal-associated 29.
   
 
  0.595
BpHYR1_032358
Intermediate filament ifa-1; Belongs to the intermediate filament family.
    
 0.557
BpHYR1_045732
Lamin.
    
 0.557
BpHYR1_029832
Intermediate filament B; Belongs to the intermediate filament family.
    
 0.557
BpHYR1_032212
Intermediate filament ifa-1; Belongs to the intermediate filament family.
    
 0.557
BpHYR1_028182
Intermediate filament ifa-1; Belongs to the intermediate filament family.
    
 0.557
BpHYR1_004199
Intermediate filament ifa-1.
    
 0.557
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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