STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BpHYR1_028860Elongator complex 5. (307 aa)    
Predicted Functional Partners:
BpHYR1_026072
Elongator complex 2.
   
 0.990
BpHYR1_019242
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
 0.989
BpHYR1_041339
Elongator complex 6.
    
 0.969
BpHYR1_044470
KTI12-like protein.
   
 
 0.846
BpHYR1_030790
Muscle M-line assembly unc-89 isoform X7.
    
 0.833
BpHYR1_046798
Muscle M-line assembly unc-89.
    
 0.833
BpHYR1_029124
Muscle M-line assembly unc-89-like.
    
 0.833
BpHYR1_020072
Titin isoform X5.
    
 0.833
BpHYR1_020076
Muscle M-line assembly unc-89.
    
 0.833
BpHYR1_042729
Cytoplasmic tRNA 2-thiolation protein 1; Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Directly binds tRNAs and probably acts by catalyzing adenylation of tRNAs, an intermediate required for 2-thiolation. It is unclear whether it acts as a sulfurtransferase that transfers sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position.
   
 
 0.738
Your Current Organism:
Brachionus plicatilis
NCBI taxonomy Id: 10195
Other names: B. plicatilis
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