STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ELS05278.1PFAM: MatE; TIGRFAM: putative efflux protein, MATE family. (460 aa)    
Predicted Functional Partners:
ELS03552.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
   
 
 0.652
ELS04080.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
   
 
 0.652
ELS05279.1
PFAM: UbiA prenyltransferase family.
       0.598
ELS01377.1
PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.593
ELS01873.1
PFAM: Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain; Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.593
ELS01965.1
Ribosomal protein S1; PFAM: S1 RNA binding domain.
   
    0.575
ELS02635.1
Ribosomal protein S1; PFAM: S1 RNA binding domain.
   
    0.575
ELS00695.1
PFAM: Protein of unknown function (DUF3299).
  
     0.529
ELS02633.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter; ABC-2 type transporter; FHA domain.
  
  
 0.518
rplR
Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
     
 0.458
Your Current Organism:
Xenococcus sp. PCC7305
NCBI taxonomy Id: 102125
Other names: X. sp. PCC 7305, Xenococcus sp. ATCC 29373, Xenococcus sp. PCC 7305
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