STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EKV02323.1IMG reference gene:2509844530; PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases. (686 aa)    
Predicted Functional Partners:
rph
RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
 0.991
EKV01583.1
DNA segregation ATPase, FtsK/SpoIIIE family; IMG reference gene:2509843737; PFAM: FtsK/SpoIIIE family; Belongs to the FtsK/SpoIIIE/SftA family.
   
 
 0.938
EKU98874.1
DNA segregation ATPase, FtsK/SpoIIIE family; IMG reference gene:2509848188; PFAM: FtsK/SpoIIIE family.
   
 
 0.938
EKV00670.1
Ribonuclease D; IMG reference gene:2509842784; PFAM: 3'-5' exonuclease.
   
 
 0.919
EKV03583.1
NTP pyrophosphohydrolase; IMG reference gene:2509845872; PFAM: NUDIX domain.
   
 0.907
EKV00108.1
ADP-ribose pyrophosphatase; IMG reference gene:2509842186; PFAM: NUDIX domain.
   
 0.896
rplD
50S ribosomal protein L4, bacterial/organelle; Forms part of the polypeptide exit tunnel.
  
  0.847
EKV02322.1
IMG reference gene:2509844529; PFAM: Putative methyltransferase.
 
    0.812
EKV02069.1
Ribosomal protein S1; IMG reference gene:2509844254; PFAM: S1 RNA binding domain.
   
 
 0.793
EKV03079.1
Ribosomal protein S1; IMG reference gene:2509845337; PFAM: S1 RNA binding domain.
   
 
 0.793
Your Current Organism:
Leptolyngbya sp. PCC7375
NCBI taxonomy Id: 102129
Other names: Acrophormium splendidus PCC 7375, Adonisia splendidus PCC 7375, L. sp. PCC 7375, Leptolyngbya sp. PCC 7375
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.