B3RMI3_TRIAD protein (Trichoplax adhaerens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B3RMI3_TRIAD

Uncharacterized protein. (1028 aa)

Predicted Functional Partners:

B3S528_TRIAD

0.502

B3RM19_TRIAD

0.466

KATNAL2

0.446

B3S6A1_TRIAD

0.438

B3RMI4_TRIAD

0.428

B3S1P7_TRIAD

0.423

B3RPT0_TRIAD

0.420

B3S055_TRIAD

0.410

KATNB1

0.407

B3RUM2_TRIAD

0.407

Your Current Organism:

Trichoplax adhaerens

NCBI taxonomy Id: 10228
Other names: T. adhaerens

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3RM19_TRIAD	B3RMI3_TRIAD	B3RM19	B3RMI3	ACT domain-containing protein.	Uncharacterized protein.	0.466
B3RM19_TRIAD	B3RMI4_TRIAD	B3RM19	B3RMI4	ACT domain-containing protein.	Uncharacterized protein.	0.466
B3RM19_TRIAD	B3RUM2_TRIAD	B3RM19	B3RUM2	ACT domain-containing protein.	Uncharacterized protein.	0.993
B3RM19_TRIAD	B3S528_TRIAD	B3RM19	B3S528	ACT domain-containing protein.	Uncharacterized protein.	0.448
B3RM19_TRIAD	B3S6A1_TRIAD	B3RM19	B3S6A1	ACT domain-containing protein.	Uncharacterized protein.	0.991
B3RMI3_TRIAD	B3RM19_TRIAD	B3RMI3	B3RM19	Uncharacterized protein.	ACT domain-containing protein.	0.466
B3RMI3_TRIAD	B3RMI4_TRIAD	B3RMI3	B3RMI4	Uncharacterized protein.	Uncharacterized protein.	0.428
B3RMI3_TRIAD	B3RPT0_TRIAD	B3RMI3	B3RPT0	Uncharacterized protein.	Uncharacterized protein.	0.420
B3RMI3_TRIAD	B3RUM2_TRIAD	B3RMI3	B3RUM2	Uncharacterized protein.	Uncharacterized protein.	0.407
B3RMI3_TRIAD	B3S055_TRIAD	B3RMI3	B3S055	Uncharacterized protein.	TOG domain-containing protein.	0.410
B3RMI3_TRIAD	B3S1P7_TRIAD	B3RMI3	B3S1P7	Uncharacterized protein.	Uncharacterized protein.	0.423
B3RMI3_TRIAD	B3S528_TRIAD	B3RMI3	B3S528	Uncharacterized protein.	Uncharacterized protein.	0.502
B3RMI3_TRIAD	B3S6A1_TRIAD	B3RMI3	B3S6A1	Uncharacterized protein.	Uncharacterized protein.	0.438
B3RMI3_TRIAD	KATNAL2	B3RMI3	B3RRS4	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.446
B3RMI3_TRIAD	KATNB1	B3RMI3	B3RIM3	Uncharacterized protein.	Katanin p80 WD40 repeat-containing subunit B1; Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.	0.407
B3RMI4_TRIAD	B3RM19_TRIAD	B3RMI4	B3RM19	Uncharacterized protein.	ACT domain-containing protein.	0.466
B3RMI4_TRIAD	B3RMI3_TRIAD	B3RMI4	B3RMI3	Uncharacterized protein.	Uncharacterized protein.	0.428
B3RMI4_TRIAD	B3RPT0_TRIAD	B3RMI4	B3RPT0	Uncharacterized protein.	Uncharacterized protein.	0.420
B3RMI4_TRIAD	B3RUM2_TRIAD	B3RMI4	B3RUM2	Uncharacterized protein.	Uncharacterized protein.	0.407
B3RMI4_TRIAD	B3S055_TRIAD	B3RMI4	B3S055	Uncharacterized protein.	TOG domain-containing protein.	0.410